FGNet
Functional Gene Networks derived from biological enrichment analyses
Bioconductor version: 3.23 · Package version: 3.46.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface (GUI) and functions to perform the functional enrichment analysis through DAVID, GeneTerm Linker, gage (GSEA) and topGO.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FGNet")Details
| Maintainer | Sara Aibar <saibar@usal.es> |
| Author | Sara Aibar, Celia Fontanillo, Conrad Droste and Javier De Las Rivas. |
| License | GPL (>= 2) |
| URL | http://www.cicancer.org |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Clustering, FunctionalGenomics, GO, GeneSetEnrichment, Network, NetworkEnrichment, Pathways, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/FGNet/ |
Citation
From within R, enter citation("FGNet"):
Sara Aibar, Celia Fontanillo, Conrad Droste and Javier De Las Rivas. FGNet: Functional Gene Networks derived from biological enrichment analyses. doi:10.18129/B9.bioc.FGNet, R package version 3.46.0, https://bioconductor.org/packages/FGNet.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | FGNet_3.46.0.tar.gz |
| Windows binary (x86_64) | FGNet_3.46.0.zip |
| macOS binary (arm64) | FGNet_3.46.0.tgz |
| macOS binary (x86_64) | FGNet_3.46.0.tgz |
Dependencies
Depends: R (>= 4.2.0)
Imports: igraph (>= 0.6), hwriter, R.utils, XML, plotrix, reshape2, RColorBrewer, png, methods, stats, utils, graphics, grDevices
Suggests: RCurl, gage, topGO, GO.db, reactome.db, RUnit, BiocGenerics, org.Sc.sgd.db, knitr, rmarkdown, AnnotationDbi, BiocManager
Reverse dependencies
Imports Me (1): IntramiRExploreR