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Mean Log P Analysis

Bioconductor version: Release (3.19)

Pathway analysis based on p-values associated to genes from a genes expression analysis of interest. Utility functions enable to extract pathways from the Gene Ontology Biological Process (GOBP), Molecular Function (GOMF) and Cellular Component (GOCC), Kyoto Encyclopedia of Genes of Genomes (KEGG) and Reactome databases. Methodology, and helper functions to display the results as a table, barplot of pathway significance, Gene Ontology graph and pathway significance are available.

Author: Nandini Raghavan [aut], Tobias Verbeke [aut], An De Bondt [aut], Javier Cabrera [ctb], Dhammika Amaratunga [ctb], Tine Casneuf [ctb], Willem Ligtenberg [ctb], Laure Cougnaud [cre], Katarzyna Gorczak [ctb]

Maintainer: Tobias Verbeke <tobias.verbeke at>

Citation (from within R, enter citation("MLP")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

UsingMLP PDF R Script
Reference Manual PDF


biocViews GO, GeneExpression, Genetics, KEGG, Pathways, Reactome, Software
Version 1.52.0
In Bioconductor since BioC 2.8 (R-2.13) (13.5 years)
License GPL-3
Imports AnnotationDbi, gplots, graphics, stats, utils
System Requirements
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Suggests GO.db,,,,,, KEGGREST, annotate, Rgraphviz, GOstats, graph, limma, mouse4302.db, reactome.db
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Follow Installation instructions to use this package in your R session.

Source Package MLP_1.52.0.tar.gz
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