BioMartGOGeneSets
Gene Ontology Gene Sets from BioMart
Bioconductor version: 3.23 · Package version: 0.99.12
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BioMartGOGeneSets")Details
| Maintainer | Zuguang Gu <guzuguang@suat-sz.edu.cn> |
| Author | Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>) |
| License | MIT + file LICENSE |
| URL | https://github.com/jokergoo/BioMartGOGeneSets |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Organism |
| Package Short Url | https://bioconductor.org/packages/BioMartGOGeneSets/ |
Citation
From within R, enter citation("BioMartGOGeneSets"):
Zuguang Gu. BioMartGOGeneSets: Gene Ontology Gene Sets from BioMart. doi:10.18129/B9.bioc.BioMartGOGeneSets, R package version 0.99.12, https://bioconductor.org/packages/BioMartGOGeneSets.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | BioMartGOGeneSets_0.99.12.tar.gz |
Dependencies
Depends: R (>= 4.0.0)
Imports: utils, S4Vectors, GenomicRanges
Suggests: biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT