AnnotationForge
This is the released version of AnnotationForge; for the devel version, see AnnotationForge.
All Bioconductor versions of AnnotationForge
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11
Tools for building SQLite-based annotation data packages
Bioconductor version: 3.23 · Package version: 1.54.0
Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.
Author: Marc Carlson [aut], Hervé Pagès [aut], Madelyn Carlson [ctb] ('Creating probe packages' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation
From within R, enter citation("AnnotationForge"):
Marc Carlson, Hervé Pagès. AnnotationForge: Tools for building SQLite-based annotation data packages. doi:10.18129/B9.bioc.AnnotationForge, R package version 1.54.0, https://bioconductor.org/packages/AnnotationForge.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnnotationForge")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.54.0 |
| License | Artistic-2.0 |
| URL | https://bioconductor.org/packages/AnnotationForge |
| Bug Reports | https://github.com/Bioconductor/AnnotationForge/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.11 (R-2.15) (14 years) |
| Downloads rank | 167 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/AnnotationForge/ |
Documentation
| Reference Manual | |
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | AnnotationForge_1.54.0.tar.gz |
| Windows binary (x86_64) | AnnotationForge_1.53.0.zip |
| macOS binary (arm64) | AnnotationForge_1.54.0.tgz |
| macOS binary (x86_64) | AnnotationForge_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AnnotationForge |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnnotationForge |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0), methods, utils, BiocGenerics (>= 0.15.10), Biobase (>= 1.17.0), AnnotationDbi (>= 1.33.14)
Imports: DBI, RSQLite, XML, S4Vectors, RCurl
Suggests: biomaRt, httr, GenomeInfoDb (>= 1.17.1), Biostrings, affy, hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, GO.db, rmarkdown, BiocStyle, knitr, BiocManager, BiocFileCache, RUnit
Reverse dependencies
Imports Me (4): AnnotationHubData, GGHumanMethCancerPanelv1.db, GOstats, ViSEAGO
Suggests Me (2): AnnotationDbi, AnnotationHub