Suggests |
graphics, pwalign, BSgenome(>= 1.13.14), BSgenome.Celegans.UCSC.ce2(>= 1.3.11), BSgenome.Dmelanogaster.UCSC.dm3(>= 1.3.11), BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe, hgu133aprobe, GenomicFeatures(>= 1.3.14), hgu95av2cdf, affy(>= 1.41.3), affydata(>= 1.11.5), RUnit, BiocStyle, knitr |
Linking To |
S4Vectors, IRanges, XVector |
Enhances |
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Depends On Me |
alabaster.string, altcdfenvs, amplican, Basic4Cseq, BRAIN, BSgenome, BSgenomeForge, chimeraviz, ChIPanalyser, ChIPsim, cleaver, CODEX, CRISPRseek, DECIPHER, deepSNV, GeneRegionScan, GenomicAlignments, GOTHiC, HelloRanges, hiReadsProcessor, iPAC, kebabs, MethTargetedNGS, minfi, Modstrings, MotifDb, motifTestR, msa, muscle, oligo, ORFhunteR, periodicDNA, pqsfinder, pwalign, PWMEnrich, QSutils, R453Plus1Toolbox, R4RNA, rBLAST, REDseq, rGADEM, RiboProfiling, rRDP, Rsamtools, RSVSim, sangeranalyseR, sangerseqR, SCAN.UPC, SELEX, ShortRead, SICtools, SimFFPE, ssviz, Structstrings, svaNUMT, systemPipeR, topdownr, transmogR, TreeSummarizedExperiment, triplex, VarCon, FDb.FANTOM4.promoters.hg19, pd.ag, pd.aragene.1.0.st, pd.aragene.1.1.st, pd.ath1.121501, pd.barley1, pd.bovgene.1.0.st, pd.bovgene.1.1.st, pd.bovine, pd.bsubtilis, pd.cangene.1.0.st, pd.cangene.1.1.st, pd.canine, pd.canine.2, pd.celegans, pd.chicken, pd.chigene.1.0.st, pd.chigene.1.1.st, pd.chogene.2.0.st, pd.chogene.2.1.st, pd.citrus, pd.clariom.d.human, pd.clariom.s.human, pd.clariom.s.human.ht, pd.clariom.s.mouse, pd.clariom.s.mouse.ht, pd.clariom.s.rat, pd.clariom.s.rat.ht, pd.cotton, pd.cyngene.1.0.st, pd.cyngene.1.1.st, pd.cyrgene.1.0.st, pd.cyrgene.1.1.st, pd.cytogenetics.array, pd.drogene.1.0.st, pd.drogene.1.1.st, pd.drosgenome1, pd.drosophila.2, pd.e.coli.2, pd.ecoli, pd.ecoli.asv2, pd.elegene.1.0.st, pd.elegene.1.1.st, pd.equgene.1.0.st, pd.equgene.1.1.st, pd.felgene.1.0.st, pd.felgene.1.1.st, pd.fingene.1.0.st, pd.fingene.1.1.st, pd.genomewidesnp.5, pd.genomewidesnp.6, pd.guigene.1.0.st, pd.guigene.1.1.st, pd.hc.g110, pd.hg.focus, pd.hg.u133.plus.2, pd.hg.u133a, pd.hg.u133a.2, pd.hg.u133a.tag, pd.hg.u133b, pd.hg.u219, pd.hg.u95a, pd.hg.u95av2, pd.hg.u95b, pd.hg.u95c, pd.hg.u95d, pd.hg.u95e, pd.hg18.60mer.expr, pd.ht.hg.u133.plus.pm, pd.ht.hg.u133a, pd.ht.mg.430a, pd.hta.2.0, pd.hu6800, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, pd.hugene.1.1.st.v1, pd.hugene.2.0.st, pd.hugene.2.1.st, pd.maize, pd.mapping250k.nsp, pd.mapping250k.sty, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.margene.1.0.st, pd.margene.1.1.st, pd.medgene.1.0.st, pd.medgene.1.1.st, pd.medicago, pd.mg.u74a, pd.mg.u74av2, pd.mg.u74b, pd.mg.u74bv2, pd.mg.u74c, pd.mg.u74cv2, pd.mirna.1.0, pd.mirna.2.0, pd.mirna.3.0, pd.mirna.4.0, pd.moe430a, pd.moe430b, pd.moex.1.0.st.v1, pd.mogene.1.0.st.v1, pd.mogene.1.1.st.v1, pd.mogene.2.0.st, pd.mogene.2.1.st, pd.mouse430.2, pd.mouse430a.2, pd.mta.1.0, pd.mu11ksuba, pd.mu11ksubb, pd.nugo.hs1a520180, pd.nugo.mm1a520177, pd.ovigene.1.0.st, pd.ovigene.1.1.st, pd.pae.g1a, pd.plasmodium.anopheles, pd.poplar, pd.porcine, pd.porgene.1.0.st, pd.porgene.1.1.st, pd.rabgene.1.0.st, pd.rabgene.1.1.st, pd.rae230a, pd.rae230b, pd.raex.1.0.st.v1, pd.ragene.1.0.st.v1, pd.ragene.1.1.st.v1, pd.ragene.2.0.st, pd.ragene.2.1.st, pd.rat230.2, pd.rcngene.1.0.st, pd.rcngene.1.1.st, pd.rg.u34a, pd.rg.u34b, pd.rg.u34c, pd.rhegene.1.0.st, pd.rhegene.1.1.st, pd.rhesus, pd.rice, pd.rjpgene.1.0.st, pd.rjpgene.1.1.st, pd.rn.u34, pd.rta.1.0, pd.rusgene.1.0.st, pd.rusgene.1.1.st, pd.s.aureus, pd.soybean, pd.soygene.1.0.st, pd.soygene.1.1.st, pd.sugar.cane, pd.tomato, pd.u133.x3p, pd.vitis.vinifera, pd.wheat, pd.x.laevis.2, pd.x.tropicalis, pd.xenopus.laevis, pd.yeast.2, pd.yg.s98, pd.zebgene.1.0.st, pd.zebgene.1.1.st, pd.zebrafish, harbChIP, JASPAR2014, NestLink, generegulation, sequencing, CleanBSequences, STRMPS, SubVis |
Imports Me |
AllelicImbalance, AneuFinder, AnnotationHubData, appreci8R, AssessORF, ATACseqQC, BBCAnalyzer, BCRANK, bcSeq, BEAT, BgeeCall, biovizBase, branchpointer, bsseq, BUMHMM, BUSpaRse, CellBarcode, ChIPpeakAnno, ChIPseqR, ChIPsim, chromVAR, circRNAprofiler, CircSeqAlignTk, cleanUpdTSeq, cliProfiler, CNEr, CNVfilteR, cogeqc, compEpiTools, consensusDE, coRdon, crisprBase, crisprBowtie, crisprDesign, crisprScore, crisprShiny, CrispRVariants, crisprViz, customProDB, dada2, dagLogo, DAMEfinder, Damsel, decompTumor2Sig, diffHic, DNAshapeR, DominoEffect, doubletrouble, easyRNASeq, EDASeq, enhancerHomologSearch, ensembldb, ensemblVEP, EpiTxDb, esATAC, eudysbiome, EventPointer, factR, FastqCleaner, FLAMES, GA4GHclient, gcapc, gcrma, gDNAx, GeneRegionScan, genomation, GenomAutomorphism, GenomicAlignments, GenomicDistributions, GenomicFeatures, GenomicScores, GenVisR, ggbio, ggmsa, girafe, gmapR, gmoviz, GRaNIE, GUIDEseq, Gviz, gwascat, h5vc, heatmaps, HiLDA, HiTC, HTSeqGenie, icetea, idpr, IntEREst, InterMineR, IONiseR, ipdDb, IsoformSwitchAnalyzeR, KEGGREST, LinTInd, LymphoSeq, m6Aboost, MADSEQ, MatrixRider, MDTS, MEDIPS, MEDME, memes, MesKit, metaseqR2, methimpute, methodical, methylPipe, methylscaper, mia, microbiome, microbiomeMarker, MicrobiotaProcess, microRNA, MMDiff2, mobileRNA, monaLisa, Motif2Site, motifbreakR, motifcounter, motifmatchr, motifStack, MSA2dist, MSnID, MSstatsLiP, MSstatsPTM, multicrispr, MungeSumstats, musicatk, MutationalPatterns, NanoMethViz, NanoStringNCTools, ngsReports, nucleR, oligoClasses, OmaDB, openPrimeR, ORFik, OTUbase, packFinder, pdInfoBuilder, PhyloProfile, phyloseq, pipeFrame, planttfhunter, podkat, polyester, primirTSS, proBAMr, procoil, ProteoDisco, PureCN, Pviz, qPLEXanalyzer, qsea, QuartPAC, QuasR, r3Cseq, raer, ramwas, RCAS, Rcpi, recoup, regioneR, regutools, REMP, Repitools, RESOLVE, rfaRm, rGADEM, RiboCrypt, ribosomeProfilingQC, RNAmodR, rprimer, Rqc, rtracklayer, sarks, scanMiR, scanMiRApp, scifer, scmeth, SCOPE, scoreInvHap, scPipe, scruff, seqArchR, seqArchRplus, SeqArray, seqPattern, SGSeq, signeR, SigsPack, single, SingleMoleculeFootprinting, sitadela, SNPhood, soGGi, SomaticSignatures, SparseSignatures, spiky, SpliceWiz, SPLINTER, sscu, StructuralVariantAnnotation, supersigs, surfaltr, svaRetro, synapter, SynExtend, SynMut, syntenet, TAPseq, TFBSTools, transite, tRNA, tRNAdbImport, tRNAscanImport, TVTB, txcutr, tximeta, Ularcirc, UMI4Cats, universalmotif, VariantAnnotation, VariantExperiment, VariantFiltering, VariantTools, wavClusteR, XNAString, YAPSA, EuPathDB, FDb.InfiniumMethylation.hg18, FDb.InfiniumMethylation.hg19, pd.081229.hg18.promoter.medip.hx1, pd.2006.07.18.hg18.refseq.promoter, pd.2006.07.18.mm8.refseq.promoter, pd.2006.10.31.rn34.refseq.promoter, pd.charm.hg18.example, pd.feinberg.hg18.me.hx1, pd.feinberg.mm8.me.hx1, pd.mirna.3.1, MetaScope, microbiomeDataSets, pd.atdschip.tiling, PhyloProfileData, systemPipeRdata, seqpac, alakazam, BASiNET, BASiNETEntropy, biomartr, copyseparator, crispRdesignR, CSESA, cubar, deepredeff, DNAmotif, dowser, EncDNA, ensembleTax, EpiSemble, GaMaBioMD, GB5mcPred, genBaRcode, geneHapR, GenomicSig, hoardeR, ICAMS, iimi, immuneSIM, kibior, kmeRs, kmeRtone, longreadvqs, metaCluster, MicroSEC, MitoHEAR, MixviR, ogrdbstats, OpEnHiMR, PACVr, PredCRG, refseqR, revert, SeedMatchR, seqmagick, simMP, SMITIDstruct, vhcub |
Suggests Me |
alabaster.files, annotate, AnnotationForge, AnnotationHub, autonomics, bambu, BANDITS, BiocGenerics, CSAR, eisaR, GenomicFiles, GenomicRanges, GenomicTuples, GWASTools, HiContacts, HPiP, maftools, methrix, methylumi, MiRaGE, mitoClone2, nuCpos, plyinteractions, RNAmodR.AlkAnilineSeq, rpx, rSWeeP, rTRM, screenCounter, spatzie, splatter, systemPipeTools, treeio, tripr, XVector, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, BeadArrayUseCases, AhoCorasickTrie, bbl, bio3d, DDPNA, file2meco, gkmSVM, karyotapR, maGUI, MARVEL, MiscMetabar, msaR, NameNeedle, orthGS, phangorn, polyRAD, protr, seqtrie, sigminer, Signac, tidysq |
Links To Me |
DECIPHER, kebabs, MatrixRider, pwalign, Rsamtools, ShortRead, triplex, VariantAnnotation, VariantFiltering |
Build Report |
Build Report |