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goProfiles

This is the released version of goProfiles; for the devel version, see goProfiles.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

goProfiles: an R package for the statistical analysis of functional profiles


Bioconductor version: Release (3.23)

The package implements methods to compare lists of genes based on comparing the corresponding 'functional profiles'.

Author: Alex Sanchez, Jordi Ocana and Miquel Salicru

Maintainer: Alex Sanchez <asanchez at ub.edu>

Citation (from within R, enter citation("goProfiles")):

Alex Sanchez, Jordi Ocana and Miquel Salicru. goProfiles: goProfiles: an R package for the statistical analysis of functional profiles. doi:10.18129/B9.bioc.goProfiles, R package version 1.74.0, https://bioconductor.org/packages/goProfiles.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("goProfiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goProfiles")
goProfiles-comparevisual.pdf PDF
goProfiles-plotProfileMF.pdf PDF
goProfiles Vignette PDF R Script
Reference ManualPDF

Details

biocViews Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version1.74.0
In Bioconductor sinceBioC 2.2 (R-2.7) (18.5 years)
License GPL-2
Depends Biobase, AnnotationDbi, GO.db, CompQuadForm, stringr
Imports
System Requirements
URL
See More
Suggests org.Hs.eg.db
Linking To
Enhances
Depends On Me
Imports Me goSorensen
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package goProfiles_1.74.0.tar.gz
Windows Binary (x86_64) goProfiles_1.74.0.zip (64-bit only)
macOS Binary (big-sur-x86_64) goProfiles_1.74.0.tgz
macOS Binary (sonoma-arm64) goProfiles_1.74.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/goProfiles
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/goProfiles
Package Short Url https://bioconductor.org/packages/goProfiles/
Package Downloads ReportDownload Stats