plyranges

DOI: 10.18129/B9.bioc.plyranges    

A fluent interface for manipulating GenomicRanges

Bioconductor version: Release (3.7)

A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased.

Author: Stuart Lee [aut, cre], Michael Lawrence [aut, ctb], Dianne Cook [aut, ctb]

Maintainer: Stuart Lee <lee.s at wehi.edu.au>

Citation (from within R, enter citation("plyranges")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("plyranges")

Documentation

HTML R Script Introduction
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, DataRepresentation, Infrastructure, Software, WorkflowStep
Version 1.0.1
License Artistic-2.0
Depends R (>= 3.5), methods, BiocGenerics, IRanges(>= 2.12.0), GenomicRanges(>= 1.28.4)
Imports dplyr, rlang (>= 0.2.0), magrittr, tidyr, tidyselect, rtracklayer, GenomicAlignments, GenomeInfoDb, Rsamtools, S4Vectors(>= 0.17.41), utils
LinkingTo
Suggests knitr, BiocStyle, rmarkdown, testthat, ggplot2, HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, covr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plyranges_1.0.1.tar.gz
Windows Binary plyranges_1.0.1.zip
Mac OS X 10.11 (El Capitan) plyranges_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/plyranges
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plyranges
Package Short Url http://bioconductor.org/packages/plyranges/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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