rigvf
This is the released version of rigvf; for the devel version, see rigvf.
R interface to the IGVF Catalog
Bioconductor version: Release (3.23)
The IGVF Catalog provides data on the impact of genomic variants on function. The `rigvf` package provides an interface to the IGVF Catalog, allowing easy integration with Bioconductor resources.
Author: Martin Morgan [aut] 
, Michael Love [aut, cre] , NIH NHGRI UM1HG012003 [fnd]
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
citation("rigvf")):Martin Morgan, Michael Love. rigvf: R interface to the IGVF Catalog. doi:10.18129/B9.bioc.rigvf, R package version 1.4.1, https://bioconductor.org/packages/rigvf.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rigvf")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rigvf")| Accessing data from the IGVF Catalog | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Annotation, FunctionalGenomics, GeneRegulation, GeneTarget, GenomicVariation, Software, ThirdPartyClient, VariantAnnotation |
| Version | 1.4.1 |
| In Bioconductor since | BioC 3.21 (R-4.5) (1.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1.0) |
| Imports | methods, httr2, rjsoncons, dplyr, tidyr, rlang, memoise, cachem, whisker, jsonlite, GenomicRanges, IRanges, Seqinfo |
| System Requirements | |
| URL | https://IGVF.github.io/rigvf |
| Bug Reports | https://github.com/IGVF/rigvf/issues |
See More
| Suggests | knitr, rmarkdown, testthat (>= 3.0.0), plyranges, plotgardener, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, tibble |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rigvf_1.4.1.tar.gz |
| Windows Binary (x86_64) | rigvf_1.4.1.zip |
| macOS Binary (big-sur-x86_64) | rigvf_1.4.1.tgz |
| macOS Binary (sonoma-arm64) | rigvf_1.4.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rigvf |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rigvf |
| Package Short Url | https://bioconductor.org/packages/rigvf/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |