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Bioconductor version: Release (3.18)
Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation (from within R,
enter citation("plyinteractions")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("plyinteractions")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plyinteractions")
HTML | R Script | HiCarithmetic |
HTML | R Script | plyinteractions |
Reference Manual | ||
Text | NEWS |
biocViews | Infrastructure, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.18 (R-4.3) (< 6 months) |
License | Artistic-2.0 |
Depends | R (>= 4.3.0) |
Imports | InteractionSet, GenomeInfoDb, BiocGenerics, GenomicRanges, plyranges, IRanges, S4Vectors, rlang, dplyr, tibble, tidyselect, methods, utils |
LinkingTo | |
Suggests | tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings, BiocParallel, scales, HiContactsData, rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), RefManageR |
SystemRequirements | |
Enhances | |
URL | https://github.com/js2264/plyinteractions |
BugReports | https://github.com/js2264/plyinteractions/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | plyinteractions_1.0.0.tar.gz |
Windows Binary | plyinteractions_1.0.0.zip |
macOS Binary (x86_64) | plyinteractions_1.0.0.tgz |
macOS Binary (arm64) | plyinteractions_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/plyinteractions |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plyinteractions |
Bioc Package Browser | https://code.bioconductor.org/browse/plyinteractions/ |
Package Short Url | https://bioconductor.org/packages/plyinteractions/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.18 | Source Archive |
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