plyinteractions
Extending tidy verbs to genomic interactions
Bioconductor version: 3.23 · Package version: 1.10.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plyinteractions")Details
| Maintainer | Jacques Serizay <jacquesserizay@gmail.com> |
| Author | Jacques Serizay [aut, cre] |
| License | Artistic-2.0 |
| URL | https://github.com/js2264/plyinteractions |
| Bug Reports | https://github.com/js2264/plyinteractions/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/plyinteractions/ |
Citation
From within R, enter citation("plyinteractions"):
Jacques Serizay. plyinteractions: Extending tidy verbs to genomic interactions. doi:10.18129/B9.bioc.plyinteractions, R package version 1.10.0, https://bioconductor.org/packages/plyinteractions.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | plyinteractions_1.10.0.tar.gz |
| Windows binary (x86_64) | plyinteractions_1.10.0.zip |
| macOS binary (arm64) | plyinteractions_1.10.0.tgz |
| macOS binary (x86_64) | plyinteractions_1.10.0.tgz |
Dependencies
Depends: R (>= 4.3.0), InteractionSet, plyranges
Imports: Seqinfo, BiocGenerics, GenomicRanges, IRanges, S4Vectors, rlang, dplyr, tibble, tidyselect, methods, utils
Suggests: tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings, BiocParallel, GenomeInfoDb, scales, HiContactsData, rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), RefManageR