plyinteractions

DOI: 10.18129/B9.bioc.plyinteractions  

Extending tidy verbs to genomic interactions

Bioconductor version: Release (3.18)

Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plyinteractions")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plyinteractions")

 

HTML	R Script	HiCarithmetic
HTML	R Script	plyinteractions
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.3.0)
Imports	InteractionSet, GenomeInfoDb, BiocGenerics, GenomicRanges, plyranges, IRanges, S4Vectors, rlang, dplyr, tibble, tidyselect, methods, utils
LinkingTo
Suggests	tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings, BiocParallel, scales, HiContactsData, rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), RefManageR
SystemRequirements
Enhances
URL	https://github.com/js2264/plyinteractions
BugReports	https://github.com/js2264/plyinteractions/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	plyinteractions_1.0.0.tar.gz
Windows Binary	plyinteractions_1.0.0.zip
macOS Binary (x86_64)	plyinteractions_1.0.0.tgz
macOS Binary (arm64)	plyinteractions_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/plyinteractions
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plyinteractions
Bioc Package Browser	https://code.bioconductor.org/browse/plyinteractions/
Package Short Url	https://bioconductor.org/packages/plyinteractions/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive