BOBaFIT
Refitting diploid region profiles using a clustering procedure
Bioconductor version: 3.23 · Package version: 1.16.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides a method to refit and correct the diploid region in copy number profiles. It uses a clustering algorithm to identify pathology-specific normal (diploid) chromosomes and then use their copy number signal to refit the whole profile. The package is composed by three functions: DRrefit (the main function), ComputeNormalChromosome and PlotCluster.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BOBaFIT")Details
| Maintainer | Gaia Mazzocchetti <bioinformatic.seragnoli@gmail.com> |
| Author | Andrea Poletti [aut], Gaia Mazzocchetti [aut, cre], Vincenza Solli [aut] |
| License | GPL (>= 3) |
| URL | https://github.com/andrea-poletti-unibo/BOBaFIT |
| Bug Reports | https://github.com/andrea-poletti-unibo/BOBaFIT/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Clustering, CopyNumberVariation, Normalization, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/BOBaFIT/ |
Citation
From within R, enter citation("BOBaFIT"):
Andrea Poletti, Gaia Mazzocchetti, Vincenza Solli. BOBaFIT: Refitting diploid region profiles using a clustering procedure. doi:10.18129/B9.bioc.BOBaFIT, R package version 1.16.0, https://bioconductor.org/packages/BOBaFIT.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | BOBaFIT_1.16.0.tar.gz |
| Windows binary (x86_64) | BOBaFIT_1.16.0.zip |
| macOS binary (arm64) | BOBaFIT_1.16.0.tgz |
| macOS binary (x86_64) | BOBaFIT_1.16.0.tgz |