To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HelloRanges")

In most cases, you don't need to download the package archive at all.

HelloRanges

 

   

Introduce *Ranges to bedtools users

Bioconductor version: Release (3.4)

Translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("HelloRanges")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HelloRanges")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HelloRanges")

 

PDF R Script HelloRanges Tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Coverage, DataImport, GenomeAnnotation, SequenceMatching, Sequencing, Software, VariantAnnotation
Version 1.0.1
In Bioconductor since BioC 3.4 (R-3.3) (< 6 months)
License GPL (>= 2)
Depends methods, BiocGenerics, S4Vectors(>= 0.11.6), IRanges(>= 2.7.11), GenomicRanges(>= 1.25.5), Biostrings(>= 2.41.3), BSgenome, GenomicFeatures, VariantAnnotation(>= 1.19.3), Rsamtools, GenomicAlignments, rtracklayer(>= 1.33.8), GenomeInfoDb, SummarizedExperiment
Imports docopt, stats, tools, utils
LinkingTo
Suggests HelloRangesData, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HelloRanges_1.0.1.tar.gz
Windows Binary HelloRanges_1.0.1.zip
Mac OS X 10.9 (Mavericks) HelloRanges_1.0.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/HelloRanges/tree/release-3.4
Package Short Url http://bioconductor.org/packages/HelloRanges/
Package Downloads Report Download Stats

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