basilisk

DOI: 10.18129/B9.bioc.basilisk    

Freezing Python Dependencies Inside Bioconductor Packages

Bioconductor version: Release (3.12)

Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.

Author: Aaron Lun [aut, cre, cph], Vince Carey [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("basilisk")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("basilisk")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("basilisk")

 

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Details

biocViews Infrastructure, Software
Version 1.2.0
In Bioconductor since BioC 3.11 (R-4.0) (0.5 years)
License GPL-3
Depends
Imports utils, methods, parallel, reticulate, filelock, basilisk.utils
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, testthat, callr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me BiocSklearn, dasper, densvis, MOFA2, snifter, velociraptor, zellkonverter
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package basilisk_1.2.0.tar.gz
Windows Binary basilisk_1.2.0.zip
macOS 10.13 (High Sierra) basilisk_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/basilisk
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/basilisk
Package Short Url https://bioconductor.org/packages/basilisk/
Package Downloads Report Download Stats

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