basilisk
This is the released version of basilisk; for the devel version, see basilisk.
Freezing Python Dependencies Inside Bioconductor Packages
Bioconductor version: Release (3.23)
Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.
Author: Aaron Lun [aut, cre, cph], Vince Carey [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("basilisk")):Aaron Lun. basilisk: Freezing Python Dependencies Inside Bioconductor Packages. doi:10.18129/B9.bioc.basilisk, R package version 1.24.0, https://bioconductor.org/packages/basilisk.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("basilisk")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("basilisk")| Motivation | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (6.5 years) |
| License | GPL-3 |
| Depends | reticulate |
| Imports | utils, methods, parallel, dir.expiry |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/LTLA/basilisk/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat, callr |
| Linking To | |
| Enhances | |
| Depends On Me | scviR |
| Imports Me | BiocHail, BiocSklearn, cbpManager, cfTools, densvis, DNAcycP2, DOtools, FLAMES, HiCool, Ibex, immLynx, MACSr, MOFA2, OAtools, ontoProc, orthos, OSTA, Pirat, Rcwl, recountmethylation, ReUseData, scifer, scPipe, SimBu, sketchR, snifter, spatialDE, StatescopeR, stPipe, velociraptor, zellkonverter |
| Suggests Me | CuratedAtlasQueryR, SUMO |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | basilisk_1.24.0.tar.gz |
| Windows Binary (x86_64) | basilisk_1.24.0.zip |
| macOS Binary (big-sur-x86_64) | basilisk_1.24.0.tgz |
| macOS Binary (sonoma-arm64) | basilisk_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/basilisk |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/basilisk |
| Package Short Url | https://bioconductor.org/packages/basilisk/ |
| Package Downloads Report | Download Stats |