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BiocHail

basilisk and hail


Bioconductor version: Release (3.18)

Use hail via basilisk when appropriate, or via reticulate. This package can be used in terra.bio to interact with UK Biobank resources processed by hail.is.

Author: Vincent Carey [aut, cre]

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("BiocHail")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocHail")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocHail")
01 BiocHail -- GWAS tutorial HTML R Script
02 Working with larger VCF: T2T by chromosome HTML R Script
03 Working with UK Biobank summary statistics HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.2.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License Artistic-2.0
Depends R (>= 4.3.0), graphics, stats, utils
Imports reticulate, basilisk, BiocFileCache, methods, dplyr, BiocGenerics
System Requirements
URL https://github.com/vjcitn/BiocHail
Bug Reports https://github.com/vjcitn/BiocHail/issues
See More
Suggests knitr, testthat, BiocStyle, ggplot2, DT
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocHail_1.2.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/BiocHail
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocHail
Bioc Package Browser https://code.bioconductor.org/browse/BiocHail/
Package Short Url https://bioconductor.org/packages/BiocHail/
Package Downloads Report Download Stats