Bioconductor Developer Survey 2026 Now Open!

basilisk.utils

This is the released version of basilisk.utils; for the devel version, see basilisk.utils.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

Centralized Conda Installation for Bioconductor Packages


Bioconductor version: Release (3.23)

Provides a centralized conda installation for use by other Bioconductor packages. If conda is not already available on the system, it is downloaded and installed from the Miniforge project; otherwise, no action is performed. Historically, this package was used to provide a Python installation for basilisk, hence the name.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("basilisk.utils")):

Aaron Lun. basilisk.utils: Centralized Conda Installation for Bioconductor Packages. doi:10.18129/B9.bioc.basilisk.utils, R package version 1.24.0, https://bioconductor.org/packages/basilisk.utils.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("basilisk.utils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("basilisk.utils")
conda for Bioconductor HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews Infrastructure, Software
Version1.24.0
In Bioconductor sinceBioC 3.11 (R-4.0) (6.5 years)
License GPL-3
Depends
Imports utils, methods, tools, dir.expiry
System Requirements
URL
See More
Suggests knitr, rmarkdown, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me HiCool, scifer
Suggests Me Ibex
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package basilisk.utils_1.24.0.tar.gz
Windows Binary (x86_64) basilisk.utils_1.24.0.zip
macOS Binary (big-sur-x86_64) basilisk.utils_1.24.0.tgz
macOS Binary (sonoma-arm64) basilisk.utils_1.24.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/basilisk.utils
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/basilisk.utils
Package Short Url https://bioconductor.org/packages/basilisk.utils/
Package Downloads ReportDownload Stats