Rcwl

This is the released version of Rcwl; for the devel version, see Rcwl.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

An R interface to the Common Workflow Language

Bioconductor version: Release (3.23)

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

Author: Qiang Hu [aut, cre], Qian Liu [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("Rcwl")):

Qiang Hu, Qian Liu. Rcwl: An R interface to the Common Workflow Language. doi:10.18129/B9.bioc.Rcwl, R package version 1.28.0, https://bioconductor.org/packages/Rcwl.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rcwl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rcwl")

Rcwl: An R interface to the Common Workflow Language	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ImmunoOncology, Software, WorkflowStep
Version	1.28.0
In Bioconductor since	BioC 3.9 (R-3.6) (7.5 years)
License	GPL-2 \| file LICENSE
Depends	R (>= 3.6), yaml, methods, S4Vectors
Imports	utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools, basilisk
System Requirements
URL

Suggests	testthat, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me	RcwlPipelines
Imports Me	ReUseData
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rcwl_1.28.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)	Rcwl_1.28.0.tgz
macOS Binary (sonoma-arm64)	Rcwl_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rcwl
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rcwl
Package Short Url	https://bioconductor.org/packages/Rcwl/
Package Downloads Report	Download Stats