ReUseData
Reusable and reproducible Data Management
Bioconductor version: 3.23 · Package version: 1.12.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
ReUseData is an _R/Bioconductor_ software tool to provide a systematic and versatile approach for standardized and reproducible data management. ReUseData facilitates transformation of shell or other ad hoc scripts for data preprocessing into workflow-based data recipes. Evaluation of data recipes generate curated data files in their generic formats (e.g., VCF, bed). Both recipes and data are cached using database infrastructure for easy data management and reuse. Prebuilt data recipes are available through ReUseData portal ("https://rcwl.org/dataRecipes/") with full annotation and user instructions. Pregenerated data are available through ReUseData cloud bucket that is directly downloadable through "getCloudData()".
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ReUseData")Details
| Maintainer | Qian Liu <qian.liu@roswellpark.org> |
| Author | Qian Liu [aut, cre] (ORCID: <https://orcid.org/0000-0003-1456-5099>) |
| License | GPL-3 |
| URL | https://github.com/rworkflow/ReUseData |
| Bug Reports | https://github.com/rworkflow/ReUseData/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, ImmunoOncology, Infrastructure, Preprocessing, Software |
| Package Short Url | https://bioconductor.org/packages/ReUseData/ |
Citation
From within R, enter citation("ReUseData"):
Qian Liu. ReUseData: Reusable and reproducible Data Management. doi:10.18129/B9.bioc.ReUseData, R package version 1.12.0, https://bioconductor.org/packages/ReUseData.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
- ReUseData: Reusable and Reproducible Data Management
- ReUseData: Reusable and Reproducible Data Management - quick start
- ReUseData: Workflow-based Data Recipes for Management of Reusable and Reproducible Data Resources
Download
Follow the installation instructions to use this package in your R session.
| Source package | ReUseData_1.12.0.tar.gz |
| macOS binary (arm64) | ReUseData_1.12.0.tgz |
| macOS binary (x86_64) | ReUseData_1.12.0.tgz |
Dependencies
Imports: Rcwl, RcwlPipelines, BiocFileCache, S4Vectors, stats, tools, utils, methods, jsonlite, yaml, basilisk
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle