To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splatter")

In most cases, you don't need to download the package archive at all.

splatter

 

   

Simple Simulation of Single-cell RNA Sequencing Data

Bioconductor version: Release (3.5)

Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.

Author: Luke Zappia

Maintainer: Luke Zappia <luke.zappia at mcri.edu.au>

Citation (from within R, enter citation("splatter")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splatter")

Documentation

HTML R Script An introduction to the Splatter package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcriptomics
Version 1.0.3
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License GPL-3 + file LICENSE
Depends R (>= 3.4), scater
Imports fitdistrplus, edgeR, stats, locfit, akima, Biobase, checkmate, methods, utils, matrixStats, ggplot2, scales, BiocParallel
LinkingTo
Suggests testthat, scran, progress, lme4, pscl, scDD, knitr, rmarkdown, BiocStyle, covr, S4Vectors, SummarizedExperiment, cowplot
SystemRequirements
Enhances
URL https://github.com/Oshlack/splatter
BugReports https://github.com/Oshlack/splatter/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source splatter_1.0.3.tar.gz
Windows Binary splatter_1.0.3.zip
Mac OS X 10.11 (El Capitan) splatter_1.0.3.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/splatter/tree/release-3.5
Package Short Url http://bioconductor.org/packages/splatter/
Package Downloads Report Download Stats

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