smartid
Scoring and Marker Selection Method Based on Modified TF-IDF
Bioconductor version: 3.23 · Package version: 1.8.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package enables automated selection of group specific signature, especially for rare population. The package is developed for generating specifc lists of signature genes based on Term Frequency-Inverse Document Frequency (TF-IDF) modified methods. It can also be used as a new gene-set scoring method or data transformation method. Multiple visualization functions are implemented in this package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("smartid")Details
| Maintainer | Jinjin Chen <chen.j@wehi.edu.au> |
| Author | Jinjin Chen [aut, cre] (ORCID: <https://orcid.org/0000-0001-7923-5723>) |
| License | MIT + file LICENSE |
| URL | https://davislaboratory.github.io/smartid |
| Bug Reports | https://github.com/DavisLaboratory/smartid/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Software, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/smartid/ |
Citation
From within R, enter citation("smartid"):
Jinjin Chen. smartid: Scoring and Marker Selection Method Based on Modified TF-IDF. doi:10.18129/B9.bioc.smartid, R package version 1.8.0, https://bioconductor.org/packages/smartid.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | smartid_1.8.0.tar.gz |
| Windows binary (x86_64) | smartid_1.8.0.zip |
| macOS binary (arm64) | smartid_1.8.0.tgz |
| macOS binary (x86_64) | smartid_1.8.0.tgz |