DOI: 10.18129/B9.bioc.phenopath    

Genomic trajectories with heterogeneous genetic and environmental backgrounds

Bioconductor version: Release (3.8)

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

Author: Kieran Campbell

Maintainer: Kieran Campbell <kieranrcampbell at>

Citation (from within R, enter citation("phenopath")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("phenopath", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Bayesian, GeneExpression, ImmunoOncology, PrincipalComponent, RNASeq, SingleCell, Software
Version 1.6.7
In Bioconductor since BioC 3.6 (R-3.4) (1.5 years)
License Apache License (== 2.0)
Imports Rcpp (>= 0.12.8), SummarizedExperiment, methods, stats, dplyr, tibble, ggplot2, tidyr
LinkingTo Rcpp
Suggests knitr, rmarkdown, forcats, testthat, BiocStyle, SingleCellExperiment
Depends On Me
Imports Me
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Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package phenopath_1.6.7.tar.gz
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Mac OS X 10.11 (El Capitan) phenopath_1.6.7.tgz
Source Repository git clone
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