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This is the development version of phenopath; for the stable release version, see phenopath.

Genomic trajectories with heterogeneous genetic and environmental backgrounds

Bioconductor version: Development (3.20)

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

Author: Kieran Campbell

Maintainer: Kieran Campbell <kieranrcampbell at>

Citation (from within R, enter citation("phenopath")):


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if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


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biocViews Bayesian, GeneExpression, ImmunoOncology, PrincipalComponent, RNASeq, SingleCell, Software
Version 1.29.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Apache License (== 2.0)
Imports Rcpp (>= 0.12.8), SummarizedExperiment, methods, stats, dplyr, tibble, ggplot2, tidyr
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Suggests knitr, rmarkdown, forcats, testthat, BiocStyle, SingleCellExperiment
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Source Package phenopath_1.29.0.tar.gz
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