NanoMethViz
This is the released version of NanoMethViz; for the devel version, see NanoMethViz.
All Bioconductor versions of NanoMethViz
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12
Visualise methylation data from Oxford Nanopore sequencing
Bioconductor version: 3.23 · Package version: 3.8.0
NanoMethViz is a toolkit for visualising methylation data from Oxford Nanopore sequencing. It can be used to explore methylation patterns from reads derived from Oxford Nanopore direct DNA sequencing with methylation called by callers including nanopolish, f5c and megalodon. The plots in this package allow the visualisation of methylation profiles aggregated over experimental groups and across classes of genomic features.
Author: Shian Su [cre, aut]
Maintainer: Shian Su <su.s at wehi.edu.au>
Citation
From within R, enter citation("NanoMethViz"):
Shian Su. NanoMethViz: Visualise methylation data from Oxford Nanopore sequencing. doi:10.18129/B9.bioc.NanoMethViz, R package version 3.8.0, https://bioconductor.org/packages/NanoMethViz.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NanoMethViz")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 3.8.0 |
| License | Apache License (>= 2.0) |
| URL | https://github.com/shians/NanoMethViz https://shians.github.io/NanoMethViz/ |
| Bug Reports | https://github.com/Shians/NanoMethViz/issues |
| System Requirements | C++20 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.12 (R-4.0) (5 years) |
| Downloads rank | 1154 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, LongRead, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/NanoMethViz/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoMethViz")| User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | NanoMethViz_3.8.0.tar.gz |
| Windows binary (x86_64) | NanoMethViz_3.8.0.zip |
| macOS binary (arm64) | NanoMethViz_3.8.0.tgz |
| macOS binary (x86_64) | NanoMethViz_3.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/NanoMethViz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NanoMethViz |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.0.0), methods, ggplot2 (>= 3.4.0)
Imports: cpp11 (>= 0.2.5), readr, cli, S4Vectors, SummarizedExperiment, BiocSingular, bsseq, forcats, assertthat, AnnotationDbi, Rcpp, dplyr, dbscan, e1071, fs, GenomicRanges, Biostrings, ggrastr, glue, graphics, IRanges, limma (>= 3.44.0), patchwork, purrr, rlang, R.utils, Rsamtools, scales (>= 1.2.0), stats, stringr, tibble, tidyr, utils, withr
LinkingTo: Rcpp
Suggests: BiocStyle, Mus.musculus (>= 1.3.1), Homo.sapiens (>= 1.3.1), org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Mmusculus.UCSC.mm39.refGene, knitr, rmarkdown, rtracklayer, testthat (>= 3.0.0), covr