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Visualise methylation data from Oxford Nanopore sequencing

Bioconductor version: Release (3.19)

NanoMethViz is a toolkit for visualising methylation data from Oxford Nanopore sequencing. It can be used to explore methylation patterns from reads derived from Oxford Nanopore direct DNA sequencing with methylation called by callers including nanopolish, f5c and megalodon. The plots in this package allow the visualisation of methylation profiles aggregated over experimental groups and across classes of genomic features.

Author: Shian Su [cre, aut]

Maintainer: Shian Su <su.s at>

Citation (from within R, enter citation("NanoMethViz")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


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User's Guide HTML R Script
Reference Manual PDF


biocViews DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, LongRead, Software, Visualization
Version 3.0.2
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License Apache License (>= 2.0)
Depends R (>= 4.0.0), methods, ggplot2 (>= 3.4.0)
Imports cpp11 (>= 0.2.5), readr, cli, S4Vectors, SummarizedExperiment, BiocSingular, bsseq, forcats, assertthat, AnnotationDbi, Rcpp, dplyr, data.table, dbscan, e1071, fs, GenomicRanges, Biostrings, ggrastr, glue, graphics, IRanges, limma(>= 3.44.0), patchwork, purrr, rlang, R.utils, Rsamtools, scales (>= 1.2.0), scico, stats, stringr, tibble, tidyr, utils, withr, zlibbioc
System Requirements C++20
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Suggests BiocStyle, DSS, Mus.musculus(>= 1.3.1), Homo.sapiens(>= 1.3.1),, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene,, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Mmusculus.UCSC.mm39.refGene, knitr, rmarkdown, rtracklayer, testthat (>= 3.0.0), covr
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Source Package NanoMethViz_3.0.2.tar.gz
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macOS Binary (x86_64) NanoMethViz_3.0.2.tgz
macOS Binary (arm64) NanoMethViz_3.0.2.tgz
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