AnVIL
Bioconductor on the AnVIL compute environment
Bioconductor version: 3.23 · Package version: 1.24.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVIL package provides programatic access to the Dockstore, Leonardo, Rawls, TDR, and Terra RESTful programming interfaces. For platform-specific user-level functionality, see either the AnVILGCP or AnVILAz package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnVIL")Details
| Maintainer | Marcel Ramos <marcel.ramos@sph.cuny.edu> |
| Author | Marcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>), Martin Morgan [aut] (ORCID: <https://orcid.org/0000-0002-5874-8148>), Kayla Interdonato [aut], Yubo Cheng [aut], Nitesh Turaga [aut], BJ Stubbs [ctb], Vincent Carey [ctb], Sehyun Oh [ctb], Sweta Gopaulakrishnan [ctb], Valerie Obenchain [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/Bioconductor/AnVIL |
| Bug Reports | https://github.com/Bioconductor/AnVIL/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/AnVIL/ |
Citation
From within R, enter citation("AnVIL"):
Marcel Ramos, Martin Morgan, Kayla Interdonato, Yubo Cheng, Nitesh Turaga. AnVIL: Bioconductor on the AnVIL compute environment. doi:10.18129/B9.bioc.AnVIL, R package version 1.24.1, https://bioconductor.org/packages/AnVIL.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
- Dockstore and Bioconductor for AnVIL
- Introduction to the AnVIL package
- Running an AnVIL workflow within R
Download
Follow the installation instructions to use this package in your R session.
| Source package | AnVIL_1.24.1.tar.gz |
| Windows binary (x86_64) | AnVIL_1.24.1.zip |
| macOS binary (arm64) | AnVIL_1.24.1.tgz |
| macOS binary (x86_64) | AnVIL_1.24.1.tgz |
Dependencies
Depends: R (>= 4.5.0), dplyr, AnVILBase
Imports: stats, utils, methods, futile.logger, GCPtools, jsonlite, httr, digest, keyring, rapiclient, yaml, tibble, shiny, DT, miniUI, htmltools, BiocBaseUtils
Suggests: knitr, rmarkdown, testthat, withr, readr, BiocStyle, devtools, AnVILAz, AnVILGCP, lifecycle
Reverse dependencies
Depends On Me (2): BiocAzul, cBioPortalData
Imports Me (4): AnVILPublish, AnVILWorkflow, bedbaser, terraTCGAdata