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AnVILBase

This is the released version of AnVILBase; for the devel version, see AnVILBase.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20

Generic functions for interacting with the AnVIL ecosystem


Bioconductor version: Release (3.23)

Provides generic functions for interacting with the AnVIL ecosystem. Packages that use either GCP or Azure in AnVIL are built on top of AnVILBase. Extension packages will provide methods for interacting with other cloud providers.

Author: Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Martin Morgan [aut, ctb] ORCID iD ORCID: 0000-0002-5874-8148 , NIH NHGRI U24HG004059 [fnd]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("AnVILBase")):

Marcel Ramos, Martin Morgan. AnVILBase: Generic functions for interacting with the AnVIL ecosystem. doi:10.18129/B9.bioc.AnVILBase, R package version 1.6.0, https://bioconductor.org/packages/AnVILBase.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILBase")
Introduction to AnVILBase HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews Infrastructure, Software
Version1.6.0
In Bioconductor sinceBioC 3.20 (R-4.4) (2 years)
License Artistic-2.0
Depends R (>= 4.5.0)
Imports httr, httr2, dplyr, jsonlite, methods, tibble
System Requirements
URLhttps://github.com/Bioconductor/AnVILBase
Bug Reportshttps://github.com/Bioconductor/AnVILBase/issues
See More
Suggests AnVIL, AnVILAz, AnVILGCP, BiocStyle, GCPtools, knitr, rmarkdown, testthat (>= 3.0.0), tinytest
Linking To
Enhances
Depends On Me AnVIL, AnVILWorkflow
Imports Me AnVILAz, AnVILGCP, GCPtools
Suggests Me terraTCGAdata
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVILBase_1.6.0.tar.gz
Windows Binary (x86_64) AnVILBase_1.6.0.zip
macOS Binary (big-sur-x86_64) AnVILBase_1.6.0.tgz
macOS Binary (sonoma-arm64) AnVILBase_1.6.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/AnVILBase
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/AnVILBase
Package Short Url https://bioconductor.org/packages/AnVILBase/
Package Downloads ReportDownload Stats