bedbaser
A BEDbase client
Bioconductor version: 3.23 · Package version: 1.4.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
A client for BEDbase. bedbaser provides access to the API at api.bedbase.org. It also includes convenience functions to import BED files into GRanges objects and BEDsets into GRangesLists.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bedbaser")Details
| Maintainer | Andres Wokaty <andres.wokaty@sph.cuny.edu> |
| Author | Andres Wokaty [aut, cre] (ORCID: <https://orcid.org/0009-0008-0900-8793>), Levi Waldron [aut] (ORCID: <https://orcid.org/0000-0003-2725-0694>), NCI [fnd] (GrantNo.: U24CA289073) |
| License | Artistic License 2.0 |
| URL | https://github.com/waldronlab/bedbaser |
| Bug Reports | https://github.com/waldronlab/bedbaser/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Software, ThirdPartyClient |
| Package Short Url | https://bioconductor.org/packages/bedbaser/ |
Citation
From within R, enter citation("bedbaser"):
Andres Wokaty, Levi Waldron. bedbaser: A BEDbase client. doi:10.18129/B9.bioc.bedbaser, R package version 1.4.1, https://bioconductor.org/packages/bedbaser.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | bedbaser_1.4.1.tar.gz |
| Windows binary (x86_64) | bedbaser_1.3.6.zip |
| macOS binary (arm64) | bedbaser_1.4.0.tgz |
| macOS binary (x86_64) | bedbaser_1.4.0.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: AnVIL (>= 1.16.0), BiocFileCache, curl, dplyr, GenomeInfoDb, GenomicRanges, httr, methods, purrr, rtracklayer, rlang, R.utils, stats, stringr, tibble, tidyr, tools, utils
Suggests: BiocStyle, knitr, liftOver, testthat (>= 3.0.0), withr