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AnVILGCP

The GCP R Client for the AnVIL

Bioconductor version: 3.23 · Package version: 1.6.2

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to use the API calls from the AnVIL package. It coordinates AnVIL workspace functionality with native GCP tools.

DOI: 10.18129/B9.bioc.AnVILGCP

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILGCP")

Details

MaintainerMarcel Ramos <marcel.ramos@sph.cuny.edu>
AuthorMarcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>), Nitesh Turaga [aut], Martin Morgan [aut] (ORCID: <https://orcid.org/0000-0002-5874-8148>)
LicenseArtistic-2.0
URLhttps://github.com/Bioconductor/AnVILGCP
Bug Reportshttps://github.com/Bioconductor/AnVILGCP/issues
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsDataImport, Infrastructure, Software, ThirdPartyClient
Package Short Url https://bioconductor.org/packages/AnVILGCP/

Citation

From within R, enter citation("AnVILGCP"):

Marcel Ramos, Nitesh Turaga, Martin Morgan. AnVILGCP: The GCP R Client for the AnVIL. doi:10.18129/B9.bioc.AnVILGCP, R package version 1.6.2, https://bioconductor.org/packages/AnVILGCP.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageAnVILGCP_1.6.2.tar.gz
Windows binary (x86_64)AnVILGCP_1.6.2.zip
macOS binary (arm64)AnVILGCP_1.6.2.tgz
macOS binary (x86_64)AnVILGCP_1.6.2.tgz
Dependencies

Depends: R (>= 4.5.0)

Imports: AnVILBase, BiocBaseUtils, dplyr, GCPtools (>= 0.99.4), httr, jsonlite, methods, rlang, stats, tibble, tidyr, utils

Suggests: AnVIL, BiocStyle, knitr, rmarkdown, testthat, withr

Reverse dependencies

Depends On Me (2): AnVILWorkflow, terraTCGAdata

Imports Me (1): AnVILPublish

Suggests Me (2): AnVIL, AnVILBase