scTensor

DOI: 10.18129/B9.bioc.scTensor    

This is the development version of scTensor; to use it, please install the devel version of Bioconductor.

Detection of cell-cell interaction within single-cell RNA-Seq data

Bioconductor version: Development (3.10)

The algorithm is based on the non-negative tucker decomposition (NTD) of nnTensor.

Author: Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("scTensor")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scTensor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scTensor")

 

HTML R Script scTensor
PDF   Reference Manual

Details

biocViews DimensionReduction, SingleCell, Software
Version 1.1.0
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methods, RSQLite, igraph, S4Vectors, plotly, reactome.db, AnnotationDbi, SummarizedExperiment, SingleCellExperiment, nnTensor, rTensor, abind, plotrix, heatmaply, tagcloud, rmarkdown, BiocStyle, knitr, biomaRt, MeSHDbi, grDevices, graphics, stats, utils, outliers, Category, meshr, GOstats, ReactomePA, DOSE, crayon, checkmate
LinkingTo
Suggests testthat, LRBase.Hsa.eg.db, MeSH.Hsa.eg.db, LRBase.Mmu.eg.db, MeSH.Mmu.eg.db, LRBaseDbi
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scTensor_1.1.0.tar.gz
Windows Binary scTensor_1.1.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) scTensor_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scTensor
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scTensor
Package Short Url http://bioconductor.org/packages/scTensor/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: