meshr

DOI: 10.18129/B9.bioc.meshr    

This is the development version of meshr; for the stable release version, see meshr.

Tools for conducting enrichment analysis of MeSH

Bioconductor version: Development (3.14)

A set of annotation maps describing the entire MeSH assembled using data from MeSH.

Author: Koki Tsuyuzaki, Itoshi Nikaido, Gota Morota

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("meshr")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("meshr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("meshr")

 

HTML R Script AnnotationHub-style MeSH ORA Framework from BioC 3.14
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, AnnotationData, Bioinformatics, FunctionalAnnotation, MeSHDb, MultipleComparisons, Software, Statistics
Version 1.99.1
In Bioconductor since BioC 2.14 (R-3.1) (7.5 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports markdown, rmarkdown, BiocStyle, knitr, methods, stats, utils, fdrtool, MeSHDbi, Category, S4Vectors, BiocGenerics, RSQLite
LinkingTo
Suggests
SystemRequirements
Enhances
URL
BugReports https://github.com/rikenbit/meshr/issues
Depends On Me
Imports Me scTensor
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package meshr_1.99.1.tar.gz
Windows Binary meshr_1.99.1.zip
macOS 10.13 (High Sierra) meshr_1.99.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/meshr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/meshr
Package Short Url https://bioconductor.org/packages/meshr/
Package Downloads Report Download Stats

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