reactome.db
This is the development version of reactome.db; for the stable release version, see reactome.db.
A set of annotation maps for reactome
Bioconductor version: Development (3.24)
A set of annotation maps for reactome assembled using data from reactome. This package has been created by a third-party developer, and is not affiliated with the Reactome team.
Author: Willem Ligtenberg
Maintainer: Willem Ligtenberg <willem at 42analytics.eu>
citation("reactome.db")):Willem Ligtenberg. reactome.db: A set of annotation maps for reactome. doi:10.18129/B9.bioc.reactome.db, R package version 1.96.0, https://bioconductor.org/packages/reactome.db.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("reactome.db") For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| No vignettes available | |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | AnnotationData, FunctionalAnnotation |
| Version | 1.96.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (15.5 years) |
| License | CC BY 4.0 |
| Depends | R (>= 2.7.0), methods, AnnotationDbi (>= 1.33.0) |
| Imports | methods, AnnotationDbi |
| System Requirements | |
| URL | |
| Bug Reports | https://gitlab.com/42analytics1/public/reactome.db-r-package/-/issues |
See More
| Suggests | RSQLite |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | attract, bioCancer, famat, methylGSA, NoRCE, ReactomePA, scTensor, signatureSearch, SMITE |
| Suggests Me | AnnotationDbi, BaseSet, BioCor, ChIPpeakAnno, FGNet, fgsea, gatom, MLP, PathwayVote, PCAN, PhosR, rGREAT, rliger, safe, sparrow |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | reactome.db_1.96.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/reactome.db/ |
| Package Downloads Report | Download Stats |