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reactome.db

This is the development version of reactome.db; for the stable release version, see reactome.db.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8

A set of annotation maps for reactome


Bioconductor version: Development (3.24)

A set of annotation maps for reactome assembled using data from reactome. This package has been created by a third-party developer, and is not affiliated with the Reactome team.

Author: Willem Ligtenberg

Maintainer: Willem Ligtenberg <willem at 42analytics.eu>

Citation (from within R, enter citation("reactome.db")):

Willem Ligtenberg. reactome.db: A set of annotation maps for reactome. doi:10.18129/B9.bioc.reactome.db, R package version 1.96.0, https://bioconductor.org/packages/reactome.db.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("reactome.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference ManualPDF
NEWSText

Details

biocViews AnnotationData, FunctionalAnnotation
Version1.96.0
In Bioconductor sinceBioC 2.8 (R-2.13) (15.5 years)
License CC BY 4.0
Depends R (>= 2.7.0), methods, AnnotationDbi (>= 1.33.0)
Imports methods, AnnotationDbi
System Requirements
URL
Bug Reportshttps://gitlab.com/42analytics1/public/reactome.db-r-package/-/issues
See More
Suggests RSQLite
Linking To
Enhances
Depends On Me
Imports Me attract, bioCancer, famat, methylGSA, NoRCE, ReactomePA, scTensor, signatureSearch, SMITE
Suggests Me AnnotationDbi, BaseSet, BioCor, ChIPpeakAnno, FGNet, fgsea, gatom, MLP, PathwayVote, PCAN, PhosR, rGREAT, rliger, safe, sparrow
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package reactome.db_1.96.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url https://bioconductor.org/packages/reactome.db/
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