AnVILGCP

This is the development version of AnVILGCP; to use it, please install the devel version of Bioconductor.

The GCP R Client for the AnVIL


Bioconductor version: Development (3.20)

The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to work with the AnVIL package. User-level interaction with this package should be minimal.

Author: Marcel Ramos [aut, cre] , Nitesh Turaga [aut], Martin Morgan [aut]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("AnVILGCP")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnVILGCP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILGCP")
Working with AnVIL on GCP HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software, ThirdPartyClient
Version 0.99.38
In Bioconductor since BioC 3.20 (R-4.4)
License Artistic-2.0
Depends
Imports AnVILBase, BiocBaseUtils, dplyr, httr, jsonlite, parallel, methods, rlang, stats, tibble, tidyr, utils
System Requirements gsutil, gcloud
URL https://github.com/Bioconductor/AnVILGCP
Bug Reports https://github.com/Bioconductor/AnVILGCP/issues
See More
Suggests AnVIL, BiocStyle, httr2, knitr, rmarkdown, testthat, withr
Linking To
Enhances
Depends On Me AnVILWorkflow, terraTCGAdata
Imports Me AnVILPublish
Suggests Me AnVIL, AnVILBase
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVILGCP_0.99.38.tar.gz
Windows Binary (x86_64) AnVILGCP_0.99.38.zip
macOS Binary (x86_64) AnVILGCP_0.99.38.tgz
macOS Binary (arm64) AnVILGCP_0.99.38.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnVILGCP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnVILGCP
Bioc Package Browser https://code.bioconductor.org/browse/AnVILGCP/
Package Short Url https://bioconductor.org/packages/AnVILGCP/
Package Downloads Report Download Stats