terraTCGAdata
This is the development version of terraTCGAdata; for the stable release version, see terraTCGAdata.
All Bioconductor versions of terraTCGAdata
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15
OpenAccess TCGA Data on Terra as MultiAssayExperiment
Bioconductor version: 3.24 · Package version: 1.17.1
Leverage the existing open access TCGA data on Terra with well-established Bioconductor infrastructure. Make use of the Terra data model without learning its complexities. With a few functions, you can copy / download and generate a MultiAssayExperiment from the TCGA example workspaces provided by Terra.
Author: Marcel Ramos [aut, cre] 
, NHGRI [fnd] (GrantNo.: U24HG010263)
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
Citation
From within R, enter citation("terraTCGAdata"):
Marcel Ramos. terraTCGAdata: OpenAccess TCGA Data on Terra as MultiAssayExperiment. doi:10.18129/B9.bioc.terraTCGAdata, R package version 1.17.1, https://bioconductor.org/packages/terraTCGAdata.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("terraTCGAdata")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.17.1 |
| License | Artistic-2.0 |
| URL | https://github.com/waldronlab/terraTCGAdata |
| Bug Reports | https://github.com/waldronlab/terraTCGAdata/issues |
| Last updated | 2026-04-29 |
| In Bioconductor since | BioC 3.15 (R-4.2) (4 years) |
| Downloads rank | 1991 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/terraTCGAdata/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("terraTCGAdata")| terraTCGAdata Introduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | terraTCGAdata_1.17.1.tar.gz |
| Windows binary (x86_64) | terraTCGAdata_1.17.1.zip |
| macOS binary (arm64) | terraTCGAdata_1.17.1.tgz |
| macOS binary (x86_64) | terraTCGAdata_1.17.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/terraTCGAdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/terraTCGAdata |
| Package Downloads Report | Download Stats |
Dependencies
Depends: AnVILGCP, MultiAssayExperiment
Imports: AnVIL, BiocFileCache, dplyr, GenomicRanges, methods, RaggedExperiment, readr, S4Vectors, stats, tidyr, TCGAutils, utils
Suggests: AnVILBase, GCPtools, knitr, rmarkdown, BiocStyle, withr, testthat (>= 3.0.0)