SCATEData

DOI: 10.18129/B9.bioc.SCATEData  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)

Bioconductor version: Release (3.18)

SCATEData is an ExperimentHub package for SCATE which is a software tool for extracting and enhancing the sparse and discrete Single-cell ATAC-seq Signal.

Author: Zhicheng Ji [aut], Weiqiang Zhou [aut], Wenpin Hou [cre, aut] , Hongkai Ji [aut]

Maintainer: Wenpin Hou <wp.hou3 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SCATEData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ExperimentData, ExperimentHub
Version	1.12.0
License	MIT + file LICENSE
Depends	ExperimentHub, GenomicAlignments, GenomicRanges, base
Imports	utils
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/Winnie09/SCATEData/issues
Depends On Me	SCATE
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SCATEData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SCATEData
Package Short Url	https://bioconductor.org/packages/SCATEData/
Package Downloads Report	Download Stats