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This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
Bioconductor version: Release (3.18)
SCATEData is an ExperimentHub package for SCATE which is a software tool for extracting and enhancing the sparse and discrete Single-cell ATAC-seq Signal.
Author: Zhicheng Ji [aut], Weiqiang Zhou [aut], Wenpin Hou [cre, aut] , Hongkai Ji [aut]
Maintainer: Wenpin Hou <wp.hou3 at gmail.com>
Citation (from within R,
enter citation("SCATEData")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SCATEData")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | ExperimentData, ExperimentHub |
Version | 1.12.0 |
License | MIT + file LICENSE |
Depends | ExperimentHub, GenomicAlignments, GenomicRanges, base |
Imports | utils |
LinkingTo | |
Suggests | knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
BugReports | https://github.com/Winnie09/SCATEData/issues |
Depends On Me | SCATE |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/SCATEData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SCATEData |
Package Short Url | https://bioconductor.org/packages/SCATEData/ |
Package Downloads Report | Download Stats |
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