trackViewer

DOI: 10.18129/B9.bioc.trackViewer    

A R/Bioconductor package for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

Bioconductor version: Release (3.7)

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

Author: Jianhong Ou, Yong-Xu Wang, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at duke.edu>

Citation (from within R, enter citation("trackViewer")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("trackViewer")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("trackViewer")

 

HTML R Script trackViewer Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, Visualization
Version 1.16.0
In Bioconductor since BioC 2.14 (R-3.1) (4.5 years)
License GPL (>= 2)
Depends R (>= 3.1.0), grDevices, methods, GenomicRanges, grid
Imports GenomeInfoDb, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, S4Vectors, rtracklayer, BiocGenerics, scales, tools, IRanges, AnnotationDbi, grImport, htmlwidgets, plotrix, Rgraphviz, InteractionSet, graph
LinkingTo
Suggests biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation
SystemRequirements
Enhances
URL
Depends On Me
Imports Me NADfinder
Suggests Me ATACseqQC, ChIPpeakAnno
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package trackViewer_1.16.0.tar.gz
Windows Binary trackViewer_1.16.0.zip
Mac OS X 10.11 (El Capitan) trackViewer_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/trackViewer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/trackViewer
Package Short Url http://bioconductor.org/packages/trackViewer/
Package Downloads Report Download Stats

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