geomeTriD
A R/Bioconductor package for interactive 3D plot of epigenetic data or single cell data
Bioconductor version: Release (3.20)
geomeTriD (Three Dimensional Geometry Package) create interactive 3D plots using the GL library with the 'three.js' visualization library (https://threejs.org) or the rgl library. In addition to creating interactive 3D plots, the application also generates simplified models in 2D. These 2D models provide a more straightforward visual representation, making it easier to analyze and interpret the data quickly. This functionality ensures that users have access to both detailed three-dimensional visualizations and more accessible two-dimensional views, catering to various analytical needs.
Author: Jianhong Ou [aut, cre]
Maintainer: Jianhong Ou <jianhong.ou at duke.edu>
citation("geomeTriD")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("geomeTriD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geomeTriD")
geomeTriD Vignette: Plot data in 3D | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Software, Visualization |
Version | 1.0.0 |
In Bioconductor since | BioC 3.20 (R-4.4) (< 6 months) |
License | MIT + file LICENSE |
Depends | R (>= 4.4.0) |
Imports | BiocGenerics, GenomeInfoDb, GenomicRanges, graphics, grDevices, grid, htmlwidgets, igraph, InteractionSet, IRanges, MASS, Matrix, methods, plotrix, rgl, rjson, S4Vectors, scales, stats, trackViewer |
System Requirements | |
URL | https://github.com/jianhong/geomeTriD |
Bug Reports | https://github.com/jianhong/geomeTriD/issues |
See More
Suggests | RUnit, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, manipulateWidget, shiny, BiocStyle, knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | geomeTriD_1.0.0.tar.gz |
Windows Binary (x86_64) | geomeTriD_1.0.0.zip |
macOS Binary (x86_64) | geomeTriD_1.0.0.tgz |
macOS Binary (arm64) | geomeTriD_0.99.18.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/geomeTriD |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geomeTriD |
Bioc Package Browser | https://code.bioconductor.org/browse/geomeTriD/ |
Package Short Url | https://bioconductor.org/packages/geomeTriD/ |
Package Downloads Report | Download Stats |