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Interactive Differential Expresion Analysis Browser

Bioconductor version: Release (3.19)

Bioinformatics platform containing interactive plots and tables for differential gene and region expression studies. Allows visualizing expression data much more deeply in an interactive and faster way. By changing the parameters, users can easily discover different parts of the data that like never have been done before. Manually creating and looking these plots takes time. With DEBrowser users can prepare plots without writing any code. Differential expression, PCA and clustering analysis are made on site and the results are shown in various plots such as scatter, bar, box, volcano, ma plots and Heatmaps.

Author: Alper Kucukural <alper.kucukural at>, Onur Yukselen <onur.yukselen at>, Manuel Garber <manuel.garber at>

Maintainer: Alper Kucukural <alper.kucukural at>

Citation (from within R, enter citation("debrowser")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

DEBrowser Vignette HTML R Script
Reference Manual PDF


biocViews ChIPSeq, Clustering, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.32.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5.0)
Imports shiny, jsonlite, shinyjs, shinydashboard, shinyBS, gplots, DT, ggplot2, RColorBrewer, annotate, AnnotationDbi, DESeq2, DOSE, igraph, grDevices, graphics, stats, utils, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, stringi, reshape2,,, limma, edgeR, clusterProfiler, methods, sva, RCurl, enrichplot, colourpicker, plotly, heatmaply, Harman, pathview, apeglm, ashr
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Follow Installation instructions to use this package in your R session.

Source Package debrowser_1.32.0.tar.gz
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macOS Binary (x86_64) debrowser_1.32.0.tgz
macOS Binary (arm64) debrowser_1.32.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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