enrichplot
Visualization of Functional Enrichment Result
Bioconductor version: 3.23 · Package version: 1.32.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The 'enrichplot' package provides visualization methods for interpreting functional enrichment results from ORA or GSEA analyses. It is designed to work with the 'clusterProfiler' ecosystem and builds on 'ggplot2' for flexible and extensible graphics.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("enrichplot")Details
| Maintainer | Guangchuang Yu <guangchuangyu@gmail.com> |
| Author | Guangchuang Yu [aut, cre] (ORCID: <https://orcid.org/0000-0002-6485-8781>), Chun-Hui Gao [ctb] (ORCID: <https://orcid.org/0000-0002-1445-7939>) |
| License | Artistic-2.0 |
| URL | https://yulab-smu.top/contribution-knowledge-mining/ |
| Bug Reports | https://github.com/GuangchuangYu/enrichplot/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/enrichplot/ |
Citation
From within R, enter citation("enrichplot"):
Guangchuang Yu. enrichplot: Visualization of Functional Enrichment Result. doi:10.18129/B9.bioc.enrichplot, R package version 1.32.0, https://bioconductor.org/packages/enrichplot.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | enrichplot_1.32.0.tar.gz |
| Windows binary (x86_64) | enrichplot_1.31.2.zip |
| macOS binary (arm64) | enrichplot_1.32.0.tgz |
| macOS binary (x86_64) | enrichplot_1.32.0.tgz |
Dependencies
Depends: R (>= 4.2.0)
Imports: aplot (>= 0.2.1), DOSE, dplyr, enrichit, ggfun (>= 0.1.7), ggnewscale, ggplot2 (>= 3.5.0), ggrepel (>= 0.9.0), ggtangle (>= 0.0.9), ggtree, GOSemSim (>= 2.37.2), graphics, grid, igraph, methods, purrr, RColorBrewer, reshape2, rlang, scatterpie, stats, tidydr, utils, yulab.utils (>= 0.2.2)
Suggests: AnnotationDbi, clusterProfiler, europepmc, ggarchery, ggforce, ggHoriPlot, ggplotify, ggridges, ggstar, ggtreeExtra, ggupset, glue, grDevices, gridExtra, gson, org.Hs.eg.db, quarto, scales, tibble, tidyr
Reverse dependencies
Imports Me (13): carnation, CBNplot, ChIPseeker, clusterProfiler, damidBind, debrowser, enrichViewNet, epiSeeker, ExpHunterSuite, famat, goatea, MicrobiomeProfiler, ReactomePA
Suggests Me (14): easyEWAS, GeoTcgaData, ggpicrust2, IOBR, ivolcano, mastR, methylGSA, ReporterScore, scFeatures, scGraphVerse, SCpubr, TDbasedUFEadv, tidybulk, VISTA