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enrichplot

Visualization of Functional Enrichment Result


Bioconductor version: Release (3.18)

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. It is mainly designed to work with the 'clusterProfiler' package suite. All the visualization methods are developed based on 'ggplot2' graphics.

Author: Guangchuang Yu [aut, cre] , Erqiang Hu [ctb] , Chun-Hui Gao [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("enrichplot")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("enrichplot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("enrichplot")
enrichplot HTML
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization
Version 1.22.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports aplot (>= 0.2.1), DOSE(>= 3.16.0), ggfun (>= 0.1.3), ggnewscale, ggplot2, ggraph, graphics, grid, igraph, methods, plyr, purrr, RColorBrewer, reshape2, rlang, stats, utils, scatterpie, shadowtext, GOSemSim, magrittr, ggtree, yulab.utils (>= 0.0.8)
System Requirements
URL https://yulab-smu.top/biomedical-knowledge-mining-book/
Bug Reports https://github.com/GuangchuangYu/enrichplot/issues
See More
Suggests clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown, org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi, ggplotify, ggridges, grDevices, gridExtra, ggrepel (>= 0.9.0), ggstar, scales, ggtreeExtra, tidydr
Linking To
Enhances
Depends On Me maEndToEnd
Imports Me CBNplot, ChIPseeker, clusterProfiler, debrowser, enrichViewNet, ExpHunterSuite, MAGeCKFlute, meshes, MicrobiomeProfiler, multiSight, ReactomePA, TDbasedUFEadv
Suggests Me GeoTcgaData, mastR, methylGSA, pareg
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package enrichplot_1.22.0.tar.gz
Windows Binary enrichplot_1.22.0.zip
macOS Binary (x86_64) enrichplot_1.22.0.tgz
macOS Binary (arm64) enrichplot_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/enrichplot
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/enrichplot
Bioc Package Browser https://code.bioconductor.org/browse/enrichplot/
Package Short Url https://bioconductor.org/packages/enrichplot/
Package Downloads Report Download Stats