*********************************** Version 1.12.2 Release ********************************* - Bar bax plot name fix *********************************** Version 1.10.7 Release ********************************* - Better error reporting in data upload - Better error reporting condition selection using metadata - alldetected genes matrix downlad fixed in QC section *********************************** Version 1.10.1 Release ********************************* - LRT made default in DESeq2. - Labels in main plots changed. *********************************** Version 1.9.21 Release ********************************* - Last publication fixes *********************************** Version 1.8.6 Release ********************************* - The columns that have strings removed while loading - Labels can be changed in the main plots - Plot Information box added to give more information about the plots. *********************************** Version 1.8.4 Release ********************************* - Calculated padj and foldchange columns added to all detected genes result - Normalization issue is fixed in comparison table *********************************** Version 1.8.3 Release ********************************* - EdgeR and Limma *********************************** Version 1.8.2 Release ********************************* - Package installation changed to warning - Dependancies removed from DESCRIPTION to suppress loading messages - Biarxiv citation added ************************************ Version 1.8.1 Release ********************************** - Interactive heatmap height and width fix - DEBrowser turned to a modular structure. The modules can be used in other shiny applications. - More interactivity added to Heatmaps and main plots. - Lasso selection is added to main plots ************************************ Version 1.6.6 Release ********************************** - HTML Header fixed - A more generic file import tool that senses string columns developed ************************************ Version 1.5.4 Release ********************************** - heatmap redblue fix ************************************ Version 1.5.3 Release ********************************** - Figure caption fix - Menu fix ************************************ Version 1.5.2 Release ********************************** - img path build fix ************************************ Version 1.3.12 Release ********************************** - pca menu fix ************************************ Version 1.3.11 Release ********************************** - heatmap column fix ************************************ Version 1.3.10 Release ********************************** - addDataCols NAMESPACE fix ************************************ Version 1.3.9 Release ********************************** - heatmap pdf fix ************************************ Version 1.2.6 Release ********************************** - css change ************************************ Version 1.2.5 Release ********************************** - main plot x, y axis fix ************************************ Version 1.2.4 Release ********************************** - pcaset top percentile list fix ************************************ Version 1.2.3 Release ********************************** - Scatter plot bug fixes - Variation Bar plot order fix ************************************ Version 1.2.2 Release ********************************** - Bug fixes ************************************ Version 1.2.1 Release *********************************** - PCA Bug fixes - Bach effect correction fixes ************************************ Version 1.1.11 Release *********************************** - Bug fixes ************************************ Version 1.1.10 Release *********************************** - Normalization method selection added to main plots and tables too - Batch effect correction ************************************ Version 1.1.9 Release *********************************** - edgeR and d3heatmap dependancy fix - undocumented functions fix ************************************ Version 1.1.8 Release *********************************** - Various bug fixes - Data preperation is reachable from everywhere ************************************ Version 1.1.7 Release *********************************** - Limma, EdgeR and DESeq2 support - Interactive Heatmap - Interactive PCA - IQR and Density plots