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alabaster.base

Save Bioconductor Objects To File


Bioconductor version: Release (3.18)

Save Bioconductor data structures into file artifacts, and load them back into memory. This is a more robust and portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.base")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.base")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.base")
Creating new applications HTML R Script
Extending to new data structures HTML R Script
Saving and loading artifacts HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews DataImport, DataRepresentation, Software
Version 1.2.1
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License MIT + file LICENSE
Depends
Imports alabaster.schemas, methods, utils, S4Vectors, rhdf5, jsonlite, jsonvalidate, Rcpp
System Requirements C++17, GNU make
URL
See More
Suggests BiocStyle, rmarkdown, knitr, testthat, digest, Matrix
Linking To Rcpp, Rhdf5lib
Enhances
Depends On Me alabaster, alabaster.bumpy, alabaster.files, alabaster.mae, alabaster.ranges, alabaster.sce, alabaster.se, alabaster.spatial, alabaster.string, alabaster.vcf
Imports Me alabaster.matrix
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.base_1.2.1.tar.gz
Windows Binary alabaster.base_1.2.1.zip (64-bit only)
macOS Binary (x86_64) alabaster.base_1.2.1.tgz
macOS Binary (arm64) alabaster.base_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/alabaster.base
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alabaster.base
Bioc Package Browser https://code.bioconductor.org/browse/alabaster.base/
Package Short Url https://bioconductor.org/packages/alabaster.base/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive