alabaster.se
Load and Save SummarizedExperiments from File
Bioconductor version: 3.23 · Package version: 1.12.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Save SummarizedExperiments into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.se")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre] |
| License | MIT + file LICENSE |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, DataRepresentation, Software |
| Package Short Url | https://bioconductor.org/packages/alabaster.se/ |
Citation
From within R, enter citation("alabaster.se"):
Aaron Lun. alabaster.se: Load and Save SummarizedExperiments from File. doi:10.18129/B9.bioc.alabaster.se, R package version 1.12.0, https://bioconductor.org/packages/alabaster.se.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | alabaster.se_1.12.0.tar.gz |
| Windows binary (x86_64) | alabaster.se_1.12.0.zip |
| macOS binary (arm64) | alabaster.se_1.12.0.tgz |
| macOS binary (x86_64) | alabaster.se_1.12.0.tgz |
Dependencies
Depends: SummarizedExperiment, alabaster.base
Imports: methods, alabaster.ranges, alabaster.matrix, BiocGenerics, S4Vectors, IRanges, GenomicRanges, jsonlite
Reverse dependencies
Imports Me (5): alabaster, alabaster.mae, alabaster.sce, alabaster.vcf, celldex