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alabaster.vcf

This is the released version of alabaster.vcf; for the devel version, see alabaster.vcf.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

Save and Load Variant Data to/from File

DOI: 10.18129/B9.bioc.alabaster.vcf

Bioconductor version: Release (3.23)

Save variant calling SummarizedExperiment to file and load them back as VCF objects. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.vcf")):

Aaron Lun. alabaster.vcf: Save and Load Variant Data to/from File. doi:10.18129/B9.bioc.alabaster.vcf, R package version 1.12.0, https://bioconductor.org/packages/alabaster.vcf.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.vcf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.vcf")

Details

Package Archives

Follow Installation instructions to use this package in your R session.