alabaster.sfe
This is the released version of alabaster.sfe; for the devel version, see alabaster.sfe.
Language agnostic on disk serialization of SpatialFeatureExperiment
Bioconductor version: Release (3.23)
Builds upon the existing ArtifactDB project, expending alabaster.spatial for language agnostic on disk serialization of SpatialFeatureExperiment.
Author: Lambda Moses [aut, cre] 
Maintainer: Lambda Moses <dl3764 at columbia.edu>
citation("alabaster.sfe")):Lambda Moses. alabaster.sfe: Language agnostic on disk serialization of SpatialFeatureExperiment. doi:10.18129/B9.bioc.alabaster.sfe, R package version 1.4.0, https://bioconductor.org/packages/alabaster.sfe.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.sfe")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("alabaster.sfe")| Overview | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation, Software, Spatial |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (1.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1.0), SpatialFeatureExperiment (>= 1.9.3), alabaster.base |
| Imports | alabaster.sce, alabaster.spatial (>= 1.5.2), EBImage, jsonlite, methods, RBioFormats, S4Vectors, sfarrow, SingleCellExperiment, spatialreg, spdep, SummarizedExperiment, terra, xml2 |
| System Requirements | |
| URL | https://pachterlab.github.io/alabaster.sfe/ |
| Bug Reports | https://github.com/pachterlab/alabaster.sfe/issues |
See More
| Suggests | BiocStyle, fs, knitr, rmarkdown, scater, sf, SFEData, testthat (>= 3.0.0), Voyager (>= 1.9.1) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | alabaster.sfe_1.4.0.tar.gz |
| Windows Binary (x86_64) | alabaster.sfe_1.4.0.zip |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/alabaster.sfe |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alabaster.sfe |
| Package Short Url | https://bioconductor.org/packages/alabaster.sfe/ |
| Package Downloads Report | Download Stats |