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STexampleData

This is the development version of STexampleData; for the stable release version, see STexampleData.

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format


Bioconductor version: Development (3.20)

Collection of spatial transcriptomics datasets stored in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different platforms and have been sourced from various publicly available sources. Several datasets include images and/or reference annotation labels.

Author: Lukas M. Weber [aut, cre] , Yixing E. Dong [aut]

Maintainer: Lukas M. Weber <lmweberedu at gmail.com>

Citation (from within R, enter citation("STexampleData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("STexampleData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData
Version 1.13.0
License MIT + file LICENSE
Depends ExperimentHub, SingleCellExperiment, SpatialExperiment
Imports utils
System Requirements
URL https://github.com/lmweber/STexampleData
Bug Reports https://github.com/lmweber/STexampleData/issues
See More
Suggests BiocStyle, knitr, rmarkdown, BumpyMatrix
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me escheR, ggsc, ggspavis, nnSVG, smoothclust, spoon, SpotSweeper, tpSVG
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/STexampleData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/STexampleData
Package Short Url https://bioconductor.org/packages/STexampleData/
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