DOI: 10.18129/B9.bioc.BumpyMatrix    

This is the development version of BumpyMatrix; to use it, please install the devel version of Bioconductor.

Bumpy Matrix of Non-Scalar Objects

Bioconductor version: Development (3.13)

Implements the BumpyMatrix class and several subclasses for holding non-scalar objects in each entry of the matrix. This is akin to a ragged array but the raggedness is in the third dimension, much like a bumpy surface - hence the name. Of particular interest is the BumpyDataFrameMatrix, where each entry is a Bioconductor data frame. This allows us to naturally represent multivariate data in a format that is compatible with two-dimensional containers like the SummarizedExperiment and MultiAssayExperiment objects.

Author: Aaron Lun [aut, cre], Genentech, Inc. [cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("BumpyMatrix")):


To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


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HTML R Script The BumpyMatrix class
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biocViews DataRepresentation, Infrastructure, Software
Version 0.99.7
In Bioconductor since BioC 3.13 (R-4.1)
License MIT + file LICENSE
Imports utils, methods, Matrix, S4Vectors, IRanges
Suggests BiocStyle, knitr, rmarkdown, testthat
URL https://bioconductor.org/packages/BumpyMatrix
BugReports https://github.com/LTLA/BumpyMatrix/issues
Depends On Me
Imports Me MouseGastrulationData
Suggests Me SpatialExperiment
Links To Me
Build Report  

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Source Package BumpyMatrix_0.99.7.tar.gz
Windows Binary BumpyMatrix_0.99.7.zip (32- & 64-bit)
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Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BumpyMatrix
Package Short Url https://bioconductor.org/packages/BumpyMatrix/
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