gcrma
This is the development version of gcrma; for the stable release version, see gcrma.
Background Adjustment Using Sequence Information
Bioconductor version: Development (3.20)
Background adjustment using sequence information
Author: Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon at med.umich.edu> Jeff Gentry
Maintainer: Z. Wu <zwu at stat.brown.edu>
Citation (from within R, enter
citation("gcrma")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("gcrma")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gcrma")| gcrma1.2 | |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 2.77.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
| License | LGPL |
| Depends | R (>= 2.6.0), affy(>= 1.23.2), graphics, methods, stats, utils |
| Imports | Biobase, affy(>= 1.23.2), affyio(>= 1.13.3), XVector, Biostrings(>= 2.11.32), splines, BiocManager |
| System Requirements | |
| URL |
See More
| Suggests | affydata, tools, splines, hgu95av2cdf, hgu95av2probe |
| Linking To | |
| Enhances | |
| Depends On Me | affyILM, affyPLM, maskBAD, webbioc |
| Imports Me | affylmGUI |
| Suggests Me | panp, aroma.affymetrix |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gcrma_2.77.0.tar.gz |
| Windows Binary (x86_64) | gcrma_2.77.0.zip |
| macOS Binary (x86_64) | gcrma_2.77.0.tgz |
| macOS Binary (arm64) | gcrma_2.77.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gcrma |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gcrma |
| Bioc Package Browser | https://code.bioconductor.org/browse/gcrma/ |
| Package Short Url | https://bioconductor.org/packages/gcrma/ |
| Package Downloads Report | Download Stats |