gcrma

This is the released version of gcrma; for the devel version, see gcrma.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Background Adjustment Using Sequence Information

Bioconductor version: Release (3.23)

Background adjustment using sequence information

Author: Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon at med.umich.edu> Jeff Gentry

Maintainer: Z. Wu <zwu at stat.brown.edu>

Citation (from within R, enter citation("gcrma")):

Jean Wu, Rafael Irizarry with contributions from James MacDonald Jeff Gentry. gcrma: Background Adjustment Using Sequence Information. doi:10.18129/B9.bioc.gcrma, R package version 2.84.0, https://bioconductor.org/packages/gcrma.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gcrma")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gcrma")

gcrma1.2	PDF
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	2.84.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	LGPL
Depends	R (>= 2.6.0), affy (>= 1.23.2), graphics, methods, stats, utils
Imports	Biobase, affy (>= 1.23.2), affyio (>= 1.13.3), XVector, Biostrings (>= 2.11.32), splines, BiocManager
System Requirements
URL

Suggests	affydata, tools, splines, hgu95av2cdf, hgu95av2probe
Linking To
Enhances
Depends On Me	affyILM, affyPLM, maPredictDSC, maskBAD, webbioc
Imports Me	affycoretools, affylmGUI
Suggests Me	aroma.affymetrix, panp
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gcrma_2.84.0.tar.gz
Windows Binary (x86_64)	gcrma_2.84.0.zip
macOS Binary (big-sur-x86_64)	gcrma_2.84.0.tgz
macOS Binary (sonoma-arm64)	gcrma_2.84.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gcrma
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gcrma
Package Short Url	https://bioconductor.org/packages/gcrma/
Package Downloads Report	Download Stats