affyILM
This is the development version of affyILM; for the stable release version, see affyILM.
All Bioconductor versions of affyILM
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6
Linear Model of background subtraction and the Langmuir isotherm
Bioconductor version: 3.24 · Package version: 1.65.0
affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.
Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon
Maintainer: Myriam Kroll and Fabrice Berger <fabrice.berger at gmail.com>
Citation
From within R, enter citation("affyILM"):
K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon. affyILM: Linear Model of background subtraction and the Langmuir isotherm. doi:10.18129/B9.bioc.affyILM, R package version 1.65.0, https://bioconductor.org/packages/affyILM.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("affyILM")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.65.0 |
| License | GPL-3 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.6 (R-2.11) (16 years) |
| Downloads rank | 912 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Package Short Url | https://bioconductor.org/packages/affyILM/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affyILM")| affyILM1.3.0 | R Script | |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | affyILM_1.65.0.tar.gz |
| Windows binary (x86_64) | affyILM_1.65.0.zip |
| macOS binary (arm64) | affyILM_1.65.0.tgz |
| macOS binary (x86_64) | affyILM_1.65.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affyILM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affyILM |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.10.0), methods, gcrma
Imports: affxparser (>= 1.16.0), affy, graphics, Biobase
Suggests: AffymetrixDataTestFiles, hgfocusprobe