DOI: 10.18129/B9.bioc.affylmGUI    

This is the development version of affylmGUI; for the stable release version, see affylmGUI.

GUI for limma Package with Affymetrix Microarrays

Bioconductor version: Development (3.9)

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [cre,aut], Ken Simpson [aut], Gordon Smyth [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at>

Citation (from within R, enter citation("affylmGUI")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("affylmGUI", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML about.html
PDF R Script affylmGUI Vignette
HTML CustMenu.html
PDF Extracting affy and limma objects from affylmGUI files
HTML index.html
HTML windowsFocus.html
PDF   Reference Manual


biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version 1.57.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 14 years)
License GPL (>=2)
Imports grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, BiocManager, R2HTML, xtable
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package affylmGUI_1.57.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) affylmGUI_1.57.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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