GSEABase
This is the development version of GSEABase; for the stable release version, see GSEABase.
Gene set enrichment data structures and methods
Bioconductor version: Development (3.20)
This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).
Author: Martin Morgan [aut], Seth Falcon [aut], Robert Gentleman [aut], Paul Villafuerte [ctb] ('GSEABase' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("GSEABase")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GSEABase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSEABase")
An introduction to GSEABase | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software |
Version | 1.67.1 |
In Bioconductor since | BioC 2.1 (R-2.6) (17 years) |
License | Artistic-2.0 |
Depends | R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2) |
Imports | AnnotationDbi, XML |
System Requirements | |
URL |
See More
Suggests | hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr, RUnit |
Linking To | |
Enhances | |
Depends On Me | AGDEX, BicARE, CCPROMISE, Cepo, cpvSNP, npGSEA, PROMISE, splineTimeR, TissueEnrich, GSVAdata |
Imports Me | AUCell, BioCor, canceR, Category, cosmosR, EnrichmentBrowser, escape, gep2pep, GlobalAncova, GSRI, GSVA, mastR, miRSM, mogsa, oppar, PanomiR, phenoTest, PROMISE, RcisTarget, scTGIF, signatureSearch, singleCellTK, singscore, slalom, sparrow, TFutils, TMSig, vissE, msigdb, SingscoreAMLMutations, clustermole, RVA |
Suggests Me | BiocSet, gage, globaltest, GSAR, MAST, phenoTest, BaseSet |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GSEABase_1.67.1.tar.gz |
Windows Binary (x86_64) | GSEABase_1.67.1.zip |
macOS Binary (x86_64) | GSEABase_1.67.1.tgz |
macOS Binary (arm64) | GSEABase_1.67.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GSEABase |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSEABase |
Bioc Package Browser | https://code.bioconductor.org/browse/GSEABase/ |
Package Short Url | https://bioconductor.org/packages/GSEABase/ |
Package Downloads Report | Download Stats |