DOI: 10.18129/B9.bioc.GSEABase  

This is the development version of GSEABase; for the stable release version, see GSEABase.

Gene set enrichment data structures and methods

Bioconductor version: Development (3.18)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan [aut], Seth Falcon [aut], Robert Gentleman [aut], Paul Villafuerte [ctb] ('GSEABase' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("GSEABase")):


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HTML R Script An introduction to GSEABase
PDF   Reference Manual
Text   NEWS


biocViews GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software
Version 1.63.0
In Bioconductor since BioC 2.1 (R-2.6) (16 years)
License Artistic-2.0
Depends R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2)
Imports AnnotationDbi, XML
Suggests hgu95av2.db, GO.db,, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr, RUnit
Depends On Me AGDEX, BicARE, CCPROMISE, Cepo, cpvSNP, GSVAdata, npGSEA, PROMISE, splineTimeR, TissueEnrich
Imports Me AUCell, BioCor, canceR, Category, categoryCompare, cellHTS2, cosmosR, dreamlet, EnrichmentBrowser, escape, gep2pep, GISPA, GlobalAncova, GmicR, GSRI, GSVA, mastR, miRSM, mogsa, msigdb, oppar, PanomiR, phenoTest, PROMISE, RcisTarget, ReportingTools, scTGIF, signatureSearch, singleCellTK, singscore, SingscoreAMLMutations, slalom, sparrow, TFutils, vissE, zenith
Suggests Me BiocSet, gage, globaltest, GOstats, GSAR, GSEAlm, MAST, phenoTest
Links To Me
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