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Rgraphviz

This is the development version of Rgraphviz; for the stable release version, see Rgraphviz.

Provides plotting capabilities for R graph objects


Bioconductor version: Development (3.19)

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.

Author: Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("Rgraphviz")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rgraphviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rgraphviz")
A New Interface to Plot Graphs Using Rgraphviz PDF R Script
How To Plot A Graph Using Rgraphviz PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GraphAndNetwork, Software, Visualization
Version 2.47.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License EPL
Depends R (>= 2.6.0), methods, utils, graph, grid
Imports stats4, graphics, grDevices
System Requirements optionally Graphviz (>= 2.16)
URL
See More
Suggests RUnit, BiocGenerics, XML
Linking To
Enhances
Depends On Me biocGraph, BioMVCClass, CellNOptR, flowMerge, maEndToEnd, MineICA, netresponse, paircompviz, pathRender, ROntoTools, SplicingGraphs
Imports Me apComplex, biocGraph, BiocOncoTK, bnem, chimeraviz, CytoML, dce, DEGraph, EnrichmentBrowser, flowWorkspace, GeneNetworkBuilder, GOstats, hyperdraw, KEGGgraph, mirIntegrator, MIRit, mnem, OncoSimulR, ontoProc, paircompviz, pathview, Pigengene, qpgraph, SGCP, SplicingGraphs, TRONCO
Suggests Me a4, altcdfenvs, annotate, Category, CNORfeeder, CNORfuzzy, DEGraph, flowCore, geneplotter, GlobalAncova, globaltest, GSEABase, MLP, NCIgraph, NCIgraphData, OmnipathR, RBGL, RBioinf, rBiopaxParser, Rtreemix, safe, SNAData, SPIA, SRAdb, Streamer, topGO, ViSEAGO, vtpnet
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rgraphviz_2.47.0.tar.gz
Windows Binary Rgraphviz_2.47.0.zip
macOS Binary (x86_64) Rgraphviz_2.47.0.tgz
macOS Binary (arm64) Rgraphviz_2.47.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rgraphviz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rgraphviz
Bioc Package Browser https://code.bioconductor.org/browse/Rgraphviz/
Package Short Url https://bioconductor.org/packages/Rgraphviz/
Package Downloads Report Download Stats