simpIntLists

This is the released version of simpIntLists; for the devel version, see simpIntLists.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8

The package contains BioGRID interactions for various organisms in a simple format

Bioconductor version: Release (3.23)

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("simpIntLists")):

Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay. simpIntLists: The package contains BioGRID interactions for various organisms in a simple format. doi:10.18129/B9.bioc.simpIntLists, R package version 1.48.0, https://bioconductor.org/packages/simpIntLists.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("simpIntLists")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simpIntLists")

simpIntLists	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Arabidopsis_thaliana_Data, ExperimentData
Version	1.48.0
In Bioconductor since	BioC 2.8 (R-2.13) (15.5 years)
License	GPL (>= 2)
Depends
Imports
System Requirements
URL

Suggests
Linking To
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Depends On Me	ibh
Imports Me
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Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	simpIntLists_1.48.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/simpIntLists
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/simpIntLists
Package Short Url	https://bioconductor.org/packages/simpIntLists/
Package Downloads Report	Download Stats