shinyMethylData

This is the released version of shinyMethylData; for the devel version, see shinyMethylData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Example dataset of input data for shinyMethyl

Bioconductor version: Release (3.23)

Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Citation (from within R, enter citation("shinyMethylData")):

Jean-Philippe Fortin, Kasper Daniel Hansen. shinyMethylData: Example dataset of input data for shinyMethyl. doi:10.18129/B9.bioc.shinyMethylData, R package version 1.32.0, https://bioconductor.org/packages/shinyMethylData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("shinyMethylData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CancerData, ExperimentData, Genome
Version	1.32.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	Artistic-2.0
Depends	R (>= 3.0.0)
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	shinyMethyl
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	shinyMethylData_1.32.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/shinyMethylData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/shinyMethylData
Package Short Url	https://bioconductor.org/packages/shinyMethylData/
Package Downloads Report	Download Stats